Detect antimicrobial resistance in extensively drug-resistant bacteria- Salmonella enterica serovar Typhi

Gain focus on what really matters in your antimicrobial resistance research

The emergence and spread of antimicrobial resistant (AMR) bacteria and resistance mechanisms pose a global challenge to public health, and careful surveillance and source tracing are crucial. Whole genome sequencing has become an important method for understanding AMR determinants and for surveillance of the emergence and spread of resistant bacteria and the underlying genetic mechanisms of resistance.

Our new white paper describes how the CLC Microbial Genomics Module can be used to detect antimicrobial resistance markers from genomic data. You will discver how to use three different tools in your AMR research. The three tools are all available in the latest release of CLC Microbial Genomics Module, and are as follows:

  1. Finding resistance genes with ResFinder
  2. Finding peptide markers for antimicrobial resistance using ShortBRED
  3. Finding antimicrobial resistance causing point mutations with PointFinder

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